mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGACGGAATTTTTCTTCGAC CGAGGACAGATTTTGACAAAG CACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGACCGACCTCGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAATTCTGACGGAATTTTTCTTCGACTATATGCAC AGCGGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGATAAGCGAATATACATACCCCTACCAGATTTGAAGGCTCGCCAGCACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAGTTTGACAGAAAGTGATTTTGAACATTTGGCTCGCCGGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTCAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGCATGTGGATTCCATGTGGACCAAAGCAACAGAGTGCAATACAAATTACAATGCAGGAGCTTGCTGCGAAAGGACTTGCTTCACAGATCCCGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGACCGACCTCGATGTTCATGAGAGATTCACAAAGGAGTTCGGAGAGGAAGGATAATTCTGACGGAATTTTTCTTCGACTATATGCACTAGTTCAAACATGTTATTATTTGTAATTTACAGAACTATTGGATCAAGTGAAGTGCATAATTTTACTTCTCATAAATTGTGTATAAAAACAGTCTGAAAATTCTCAGAAAAAATAAAATTTCATGTGATAAAAAAAAAAAAAAAAA 4 0 3' arm Vigna_unguiculata mirnest 100 100 -31.7 ...........(((((((.((((((((.((.(((.((((((..(((.........))).)))))).((..((((........((((...(((.....))).))))..))))..))...))).)).)))))))).))))))).......... (-31.7)