mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGAGTGGGCTTGGGGACAG CTCCCTGGGCCTCGCCTGCTT GTGGACACGGAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCAGTGCATCGAGGAACGTTACAAGGCTGTGTGTCATGCTGCCAGGACCCGTTCTATCCTCTCCCTGGGCCTCGCCTGCTTCAAGCGAC GGGGGATTCCTCGAGCACTGTTGGCCTACTGGCCTTCGGCGACCCGACGGCTAAACCCCGCGCCATCCCCGACTGCCTGAACCGCTCCAGGAGACGGAGCGCAAGGCCAGCTTACCCACAGACGACTCAGGCGGGAGACGAGCGGTGTCATGGCCGCCTACAGTGACGATGGCGCAGCTTCAGCCCCCGCAGCTTCCGACGGTGGTGTCAGCAAAAGCACAACATCTGGGGAGGAGCTAGTAGTCCGGGTTCCCGTAGTGGATGTGCAAAGCAACAACTTCAAAGAGATGTGGCCATCCCTCCTGCTAGCCATAAAGACAGCTAATTTCGTGGCTGTGGACACGGAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCAGTGCATCGAGGAACGTTACAAGGCTGTGTGTCATGCTGCCAGGACCCGTTCTATCCTCTCCCTGGGCCTCGCCTGCTTCAAGCGACAGCCAGACAAGGGTGAACATTCCTATCTGGCTCAGGTGTTCAATCTCACTCTGCTGTGCATGGAGGAGTATGTCATAGAACCAAAGTCTGTGCAGTTCCTGATACAGCATGGCTTCAACTTCAACCAGCAGTATGCCCAAGGCATCCCCTACCATAAGGGCAATGACAAAGGTGATGAGAGCCAGAGCCAGTTAGTACGGACCCTATTCCTGGACCTATTCGAGCCCCCCGGCCCCTGTTGCTCACAATGGCCCTATAGACTTGGTGTTCCTATCCAAAACTTTTATGCACACCTTCCTTAGAAGTTGGGAACCTCG 3 2 5' arm Macaca_fascicularis mirnest 100 100 -45.4 ........(((((...(((((((((((((.((((.((...(((((...)))))..))..((((((......(((...((.....)).)))......)))))).)))).)))))))))).)))..)))))....... (-45.4)