mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGGGGGCTCAGCGCGTGAGG CAGAGGCTGCAGTCTCCAGTG GTGCCTGTTGCCCAGAGGCTGCAGTCTCCAGTGGACGCGGGTTTGTGTATAGCCTGAGTCCTCTGGGGGCTCAGCGCGTGAGGCTCACGGTG AGGACTGCAGCCCTGACTGTGGCCCCTGGCCTGTCTTTGTTGCTTGCTGAAGTCCATGAACAGAGTGTTGTTTCCCTCCAGTGGAAGGGAAGCAGGGAGCTCTGTGGACTTCACGCTGCGCTTGGTCTAGCTTAGCAGCCCCAAGATCCCTTAGTGAATCGAGGCACTGTGTTGCTTTCCTATGTGATAATTTCAAAGGAGTCCCTGGCAGTGCCTGTTGCCCAGAGGCTGCAGTCTCCAGTGGACGCGGGTTTGTGTATAGCCTGAGTCCTCTGGGGGCTCAGCGCGTGAGGCTCACGGTGGGATGGGCTCCTAAAAGATGCAGGCCTGCCTGTATTCAGGAGTACCCACCGGCCCTGCTTACTGCTGCCCAGGCCAAGTGGAGAAGTTGTTAGATGAGGTCTTAAGAGGAGAGAGGTGGCTTCTTTGAGGTGGTCGAGTGGCATCACAAACAAGCATTGAATGGAAGAAAACTAGAAGAAGCAGAGCCTGTCGCAGGTTCACTATCATCCAGCTAACACCGTGGGAAATCTCACATCCACCACTGTCAAACCGAGGACTTTGGACTTCATAACTGCTCGGAATTAAATGACCTTACCCTCCGTGGGTGAGGGCTTACTGC 3 2 3' arm Macaca_fascicularis mirnest 100 100 -39.5 ..(((((..(((((...((((.(((((((((.((((.((((((.......)))))).)))).)))))))))))))...)).))).)).))). (-39.5)