mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGGCTGGGGTCGGGACAGCC CTGCCCGAGCCCAGCCCCCT TGCAGCTGCCCGAGCCCAGCCCCCTGAGGCCCAAGCGGGAGAAACGGCCCCGCCTGCCCCGGAAACTCAAGATGGCGGTGGGGCCCCCTGACTGCCCTGTGGGAGGACCGCTGACCTTCCCTGGCCGGGGTTCTGGGGCTGGGGTCGGGACAGCCCT ATTCCGAGAATGTGGATGAAGACTCTTCAGACTCAGATGCCACTGCATCATCAGATAACAGCGAGACCGAGGGGACACCCAAGTTGTCTGACACACCGGCCCCTAAGAGGAAGAGAAGCCCTCCGCTGGGGGGGGCCCCCTCTCCCTCCAGCCTCTCCCTGCCTCCTTCAACAGGGTTTCCCCTTCAGGCCTCCGGGGTTCCCTCCCCATACCTGAGCTCGCTGGCCTCCCCCCGCTACCCCCCATTCCCTTCTGACTACCTGGCCCTGCAGCTGCCCGAGCCCAGCCCCCTGAGGCCCAAGCGGGAGAAACGGCCCCGCCTGCCCCGGAAACTCAAGATGGCGGTGGGGCCCCCTGACTGCCCTGTGGGAGGACCGCTGACCTTCCCTGGCCGGGGTTCTGGGGCTGGGGTCGGGACAGCCCTGA 2 1 3' arm Macaca_fascicularis mirnest 100 100 -76.2 ....(((((((((.(((((((((..(((.(((.((((((......(((((((((.(((...((...)).....)))))))))))).)))).))(((....((((((.........)))))).))).))).))).))))))))).))))).))))... (-76.2)