mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTGGGCGACAAAGTGAGTCT AATCTCTTGAGCCTGGGAA CTGAGGCAGGAGAATCTCTTGAGCCTGGGAAGCAGAGGTTGTAGTGAGCCACCATCATGCCACTGCACTCCAATCTGGGCGACAAAGTGAGTCTCCATCTCAA GATTCCTCGAGCACTGTTGGCCTACTGGAGAAATTAAGAATTAAACATTCTGAACAATCTTATAACAAGGCATACTAATAAATGTTCAAATTCCTAGAAAAATATGTCATATGAATTGGCAGAAATAGAAACACTAAATAAGTGTCAGGGCTGGGCATGATGGCTCATGGCTGTAATCCCAGAACTTTGGGATCCAAGGTGGGCTTATCACTTGAGGTTAGGAGTTTAAGACCAGCCTGGACAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAACCAGGCCTGGTGGTGTGCCCCTGTAATCTCAGCTACTCTGGGGGCTGAGGCAGGAGAATCTCTTGAGCCTGGGAAGCAGAGGTTGTAGTGAGCCACCATCATGCCACTGCACTCCAATCTGGGCGACAAAGTGAGTCTCCATCTCAAAAATAATAATAATAACAATAAAATACATAGATGTTAGTCTGCTCTGGATGTCATAAGAAAGTACCACAGGCTGGGGGGCTTAAACAATAAAAATTTATTTACTACCAATCCTGGAGGCTGAAAGTATGGTCAAGGTGCCACCAGGATTGGTCTCTGGTGAGACTCCTCTTCTTGGCTTGCAAATAGAGACCTTCTCATGGAGTTTTCACATGGCCTTTGTTCTGTGCATGCTTGAAGAGAAAACTCTGGTGTCTCTCTCTCTTCTTGTAAGTACATCAGTCCTATTTGATTAAGGCCTTACTCTTATGACCTTATTAACCTTAATTACCTCCTTAAGG 4 2 3' arm Macaca_fascicularis mirnest Metazoa_SRP 4e-16 ppy-mir-1273 0.00000002 -34.5 .(((((..(((((.((.(((..(((((((.....(((...((((((.((.........)))))))).)))...)))))))....))).)).))))).))))). (-34.5)