mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACACCATTGTCACACTCCA TAGTGTGATAATGGCGTTTG TATCGAGGGAAGGATTGCCTAGTAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAAATCTGCAGCCACG GATTTGTGCGCGAACCGTTTTTTCGTAGTACACAGTATGGNGACAATTAGATGAACCTTCTTGCTCAAAGCAAACGATGCCAGGACATTTATCGAGGGAAGGATTGCCTAGTAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAAATCTGCAGCCACGAATTTTTTAACTTCACCTCCACATTCCACCATTGTCACTGACAATAGGGGAACCTTGTCAGCTCCACATATTGTGACCTGAGCAGAGAAAAGAAGCATCACAGGTGCAAGCATCTTGAGCAATGGGAAGAGCTGAAGACTCACAGATGAGAGGCTTCTACGTTCTGGAACAGTAGAGTAGTAGTAAAGGGGTCCACTGCCTGTGTTCCACTGCCACCCGACAAACCCCTTCTGCAAAAACGTCCTGTGAAAATGGACAGGAACTCTGTTTACAAACATTTTCTAAAATGGCTGAGAGAGAAAGAATCTCTAGAGGGAATAGATTTCCGGAAATAAATATTTAGGGGAAGACCACATTATAAATGAGAATAATCTGACCGAATGAATGAACACTCTCCAACTCTTACCTCCTCACATACTTCCCAATCCATCATCAGTAAATGTGATCAATTCTGCAGTCTAAGAAATTAAATTATTTTA 4 0 3' arm Macaca_fascicularis mirnest mir-122 2e-21 mml-mir-122a 6e-43 -38.6 .......((..(((((.((((((((.((((....(((((((((((((.(((((............))))).)))))))))))))....))))))))).)))..)))))....))... (-38.6)