mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGAGGCAGCGCTCTCAGGAC TCTGGGCTCTGCTCCTCCTCA GTCTCAGGAGGCAGCGCTCTCAGGACGTCTCCACCATGGTCTGGGCTCTGCTCCTCCTCACC GTCTCAGGAGGCAGCGCTCTCAGGACGTCTCCACCATGGTCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGATCCTGGGCTCAGGCTGCCCTGACTCAGCCTCCCTCTGTGTCTGGGTCTCCTGGACAGTCGGTCACCATCTCCTGCACTGGAACCAGTAGTGACATCGGTGGTTATAACTATGTCTCCTGGTACCAGCAGTACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAAGCGGCCCTCAGGGGTCTCTGATCGCTTCTCTGGCTCCAAATCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCAGCTCATATGCAGACAGCAACACTTATGCCTTATTCGGAGGAGGGACCCGGCTGACCGTCCTGGGTCAGCCCAAGGCTGCCCCCTCCGTCACTCTCTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCCGTGGAAGTGGCCTGGAAGGCAGATGGCAGCGCTGTCAACGCGGGAGTGGAGACCACCACACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGTCCGACCAGTGGAAGTCCCACAAGAGCTACAGCTGCCAGGTCACGCACGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTGCAGAATGTTCATAGGTTCCCAACCCTCACCCCACCCACGGGGGCCTGCAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCCCCAAAGGCATCCAGCCCCTTCTCCCTGCACTCAATAAACCCCTCAATAAATATTCTCATTTGACATCAGAAAAAAAAAAAAAAAAAAA 3 2 5' arm Macaca_fascicularis mirnest mir-650 3e-18 mml-mir-650a-1 6e-29 -19.2 .....((((((.((((..((((((.(((.......))).))))))...)))))))))).... (-19.2)