mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGAGGCAGCGCTCTCCGGAC CCTGGGCTCTGCTCCTCCTCA GTCTCAGGAGGCAGCGCTCTCCGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACC GTCTCAGGAGGCAGCGCTCTCCGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGTTCCTGGACTCAGGCTGCCCTGACTCAGCCTCCCTCAGTGTCTGGGTCTCCTGGACAGTCGGTCACCATCTCCTGCACTGGAACCAACAGTGACATCGGTGCTTATAACTATGTCTCCTGGTACCAACAACATCCAGGCGCAGCCCCCAAAGTCATGATTTATGAGGTCAATAAGCGGCCCTCAGGGGTCTCGGATCACTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGCCTCCAGACTGAGGACGAGGCTGATTATTTCTGCAGCTCATATGCCGGCAGTAATAGTTTCATCTTCGGTAGTGGGACCCGACTCACCGTCCTAGGTCAGCCCAAGGCTTCCCCCACGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGTCGTGAAAGTGGCCTGGAAGGCAGATGGCAGCGCTGTCAACGCGGGAGTGGAGACCACCACGCCCTCCAAACAGAGCAACAACAAGTATGCGGCCAGCAGCTACCTGAGCCTGACGTCCGACCAGTGGAAGTCCCACAAGAGCTACAGCTGCCAGGTCACGCACGACGGGAGCACTGTGGAGAAGACAGTGGCCCCTGCAGAATGTTCATAGGTTCCCACCCCTACCCCACCCACGGGGGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCTCTCTCCATCACAAGGCATCAAGCCCTTCTCCCTGCACTCATGAATCCCTCATAAATATTCTCATTGACATCGGAGACGGAAAAAACAAAAAAAAAAATAACAATTGACATAAGAAATAAATCTATGGCCA 4 1 5' arm Macaca_fascicularis mirnest mir-650 3e-18 mml-mir-650b 2e-22 -18.4 .....((((((.((((...(((((.(((.......)))..)))))...)))))))))).... (-18.4)