mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAAGGCAGCGCTCTCGGGAC CCTGGGCTCTGCTCCTCCTCA GCTGGGGTCTCAGAAGGCAGCGCTCTCGGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTC GCTGGGGTCTCAGAAGGCAGCGCTCTCGGGACATCTCCACCATGGCCTGGGCTCTGCTCCTCCTCACCCTCCTCACTCAGGGCACAGGATCCTGGGCTCAGGCTGCCCTGACTCAGCCTCGCTCAGTGTCTGGGTCTCCTGGACAGTCGGTCATCATCCCCTGCACTGGAACCAGCAGTGACATCGGTGGTTATAACTTTGTCTCCTGGTATCAACAACATCCAGGCACAGCCCCCAAACTCATGATTTATGAGGTCACTAAGCGGCCCTCAGGGGTCTCTGATCGCTTCTCTGGCTCCAAGTCTGCCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGCAGTCACAGCTATGTGTTATTTGGAGGAGGGACCCGGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTCTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCCGTGGAAGTGGCCTGGAAGGCAGATGGCAGCGCTGTCAACGCGGGAGTGGAGACCACCACACCCTCCAAACAGAGCAACAACAAGTACGCGGCCAGCAGCTACCTGAGCCTGACGTCCGACCAGTGGAAGTCCCACAAGAGCTACAGCTGCCAGGTCACGCACGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTGCAGAATGTTCATAGGTTCCCAACCCTCACCCCACCCACGGGGGCCTGGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCCCAAGGCATCCAGCCCTTTTCCCTGCACTCATAACCCTCAATAAATATTCTCATTGACATCGCAGAAAAAAGACTAAAAAAAGGCCCATGTGCTCGAGCTGCAGTCGCGCGCTAGACTAGTCTAGAAGAAAAACCTCCACACCTCCCCTGACTGAAACATAAATGATGCATGTGTGTACTGTATGCAGCTATATGTAAAATAAGCAATAGCATCCAATCATAGCATTTTTCATGCATTCAGTGGTTGCCAACTTCAGTACTTACGTTCGAATGCCGTACAGTCGAATATCCTCGTTCGCTCATGATCGGTGGCTCTG 4 2 5' arm Macaca_fascicularis mirnest mir-650 1e-24 mml-mir-650b 2e-29 -21.4 ...(((((...((.(((.((((..((((((.(((.......))).))))))...))))))).)).))))).... (-21.4)