mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTTTGTTTTGGTTTGTTTTT AAACCTCCAAGACTCGAGAA TTTCTGTTTTTTGTTTTTTGTCTTTTGTTTTGGTTTGTTTTTTTATTGTTTTACTGAATGAGCACCATTTTCTCTCACGTTCGTATGCTCCTCTTCGTCACATTTTTAAAAAACCTCCAAGACTCGAGAAGGGAACAGCTGATACACC ACCTCTCTCTCCAAATCAGCTTTGAGATCTTTCTGTTTTTTGTTTTTTGTCTTTTGTTTTGGTTTGTTTTTTTATTGTTTTACTGAATGAGCACCATTTTCTCTCACGTTCGTATGCTCCTCTTCGTCACATTTTTAAAAAACCTCCAAGACTCGAGAAGGGAACAGCTGATACACCTCATTTTCATTGATTTTTTCGCTAACAAGCTTTTTTTTTTGGATAATGTGTTGGTAGGAAAGCCATTGATAGGGTGTAAGACAGAAAACTATATATTTATATGACACATCTCAAAAAATCTGGTTGCATTTCTCACAAAAAAAGCATCGGGGTGGTTTCACTCAAGATATATATTTGTATATATAACCAACACACATATCAAACGATACCCAATAATTCCGGGTTACAAGAAGAGGCCTACAACTACTATTTTGCTCGCAAGAA 4 1 5' arm Litopenaeus_vannamei mirnest 100 100 -27 .....(((..(((((((((.((((..(((((((...(((((((...(((.....((((.(((((.....................)))))...))))..))).....)))))))..)))))))..)))))))))))))..)))..... (-27)