mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTCGCCCTGGTCCTGGTCC TTCACGGACTTGGCGAAGAGT CTGGCCACGTTCTTCGCCCTGGTCCTGGTCCTGTTCGCCGGTCAGATCGCCGCTGGAGTGTGGCTCAAGACGAACGAAGAGCGATTCACGGACTTGGCGAAGAGTTCCCTGG AGGGAGTCTTGAGGTAGTTGTCGTGGAGAGCAGACGTACGCGCCGTGCTCTGGATTCTTTGTTGGATTAAAAAAGAGAAAACCCTATAAAATCCGCAGCTATGGGGGTCTGTTGTTATACTTTCCTGAAGTATATGGTCATAGTCTTCAACCTGCTTTATATGCTGTTGGGCGGCGCTCTGCTGGGCACGTCGCTATGGATGCACTTGGACGGGGCGAACATGGCACCGGTCACCGCGGACCTCGACGGCTATAACTACGTGCTGTACTTCCTGATGGCCGTGGGCGCTGTCATGTTCATCATGGGCTTCCTCGGATGCTGCGGCGCCTTCCAGGAGTCGCAGTGCATGCTGGCCACGTTCTTCGCCCTGGTCCTGGTCCTGTTCGCCGGTCAGATCGCCGCTGGAGTGTGGCTCAAGACGAACGAAGAGCGATTCACGGACTTGGCGAAGAGTTCCCTGGCCAAGTCCATCCAGCACGACTACGGCATCAATAAGCTCAAGACACAGGCCTTCGATGTCATCCAGTCCGAGCTGAAGTGTTGCGGATCAGAGGGCCCCACTGACTGGGCTGAGAGTCGCTTCAACGGCGCTGACGAGCGTGGAGTACTGGACATCGGCATCAGAGGAGCCATCGGGGCCTACAAAGTGCCTGAATCTTGCTGCAACGAGAAGGACAAGACACTGTGCGAAGCTACCCGCAGCTTGTCCATCGGGGCACAGATCACGGGCTCGATCTACACTGAGGGTTGTGCCAAGAAGATGATCCAGCTGATCCACAGCCACAGCTACGAGGTCCTGGGTGTGGTGGCTGCCATCGTCCTGATCGAAATCCTGGCCATGATATTCTCGATGGTCCTGTGCTGTGCTGTGCGTCGCATTGACCACGTCAAGGCCTAGGAGGAAAATAGCTCCCCAATATATGACCTGGGGATGGAGAGTGAAGACGATGATCCCACTGTTTAG 4 2 5' arm Litopenaeus_vannamei mirnest 100 100 -34.7 .........(((((((((..((((((((...(((((..(((((.((..(((((......)))))))..)))...))..)))))..))).))))).)))))))))........ (-34.7)