mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCAAGGCTGGTACTGCTGATC AAAGCAGTACTAAGTCTGCCA TGCGGGTAAGTTTTAAACGTCTCAAAGCAGTACTAAGTCTGCCATGGGGACCTGGCTTGTCTCTCGCCCCCTCCCTACTAGGGGCAAGGCTGGTACTGCTGATCCTGACTGCAGCACAGGGGCT CAATGCTTATCAGTTTATTTTGAAATCTACTATCATTCCTTTAAAAGGGAATTAAAGAAAAAGAGATAAAAAAGTAAAAAAAAAAAAAAGGGTAAAAATGCGGGTAAGTTTTAAACGTCTCAAAGCAGTACTAAGTCTGCCATGGGGACCTGGCTTGTCTCTCGCCCCCTCCCTACTAGGGGCAAGGCTGGTACTGCTGATCCTGACTGCAGCACAGGGGCTGCATGGTCTGGTCCCCTGTCCATTCCCAGGGGCCGTCACAAATCTCTGAATAGGCGTACACATATTCGTTTTGGACTGGCTCCCCAACCGCCGTGCACAAAATCTGACCGACGGGCGTCACGCCATCGGAGGTAATGAAGTTCAAGTCTCCTCCTCCAAACAGCTCCTCGAACTCCTTGAAGCAGCGGTTTTGGCATTTGTGGTTCTGGTCACAGCCGCCCATATCGAGGGGAGGCAGCTCGTAGAGTATCTTCTCGCCGCTGTCCAGGGTGATGAAGGCGCCGCACCTGCAGTTGGCCGGGTCCTGCGCCGCCGCCACGGCCACAACCAGAGCGAGAACAAGCAAACGGAACATCCTGAAACCCTGAAGCAATTGCGCTGCAACTGAT 4 2 3' arm Litopenaeus_vannamei mirnest 100 100 -40.3 ...(((...(((...)))..)))..((((((((((.(((((((.((((((...(((.........)))...)))))).....))).))))))))))))))..(((((.........)))))... (-40.3)