mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTGGGCAAGAAAGTGAGAGT AAAGCTCATAGCTGCCCAGACT TGCAATGATCGTCTGGGCAAGAAAGTGAGAGTCAAGTACAACTCTGATGACACCATTCGGGACCTGAAAAAGCTCATAGCTGCCCAGACTGGAACTCG GCTTCACTCTTCGGGCTTCTGTGTGAGTTCCTCGCGCGCCTGTTTCGGCCCGCTTTCGTTGGGTACCCTTAAAGGCAGGAGACTAGAGGTCTCCTAACTCAACAGTTTCTTGTACTCTGATTAGTACTGACACCAGATCGGGATGATTGAAGTGGTTTGCAATGATCGTCTGGGCAAGAAAGTGAGAGTCAAGTACAACTCTGATGACACCATTCGGGACCTGAAAAAGCTCATAGCTGCCCAGACTGGAACTCGGTGGGACAAGATTGTGCTAAAGAAATGGTACACAATTTTCAAGGACCATGTGTCACTGGCAGACTATGAAATCCATGATGGCATGAACCTAGAACTATACTATCAGTAATTTGTGGCAGATTTCATGTCTGCCATGGTCTCTTTTCTTTTTTCTTCATTTCTAATTTCATTGAAACTATCAATGGCTTGTTTAGTGGCATGAATTGTGGATAGTAATATTTTTATCCCTTATGGCAATAAACTAGAAGACATGTATTCAGACTGTGTGTTTTTTAAAAAATATAAATGTTTATAAATAAATGTGATATAACGACTAACCAAAAAAAAAAAATAAAACAAAAAAGTTAATTATGAGCAAAAGAGTAATCTAAAAAATAAAAAGAGAGAAGGGAAGGCGGAGCACAAACCATTTTTGTTATACAATAAAAGAATAGCGGCCCCGCCCCCCCACCACGCGATCTTCTATGATCTTTTTTTGTGGGGGCGCCCCGCGACTTGGTAAAAAAAAAACAAAGTATTTTTATCTCAGAAGAGTGCTCGGGGAAGAGATAGGAGTGGCTATATCAAAAAAAAAAAAACCC 4 2 5' arm Anolis_carolinensis mirnest 100 100 -25.1 ..........(((((((((.(...(((((..(((.((....(((.((((....)))).))))).))).....)))))..))))))))))......... (-25.1)