mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGAAGGGAGGAAAGAAGAGG TCTCTTTCCTCTTTTCCACT TCCTTCCTCTTTGGTGCCTTGGATAGAACTGGTTTGGGAGGAAGAAGGGAGGAAAGAAGAGGAGAGAAAAGGAGGAAAGAGGAGGAAGAAGAAAACCCTGGAAGAACTGCAGAGGGAGAAGAAGTTGTCCTTGTGGTCTGTCCTTCCCAGCTTCTCTTTCCTCTTTTCCACTTTGGGTAGAACTGTTTTGGGGAGGAGCCAGGAGGAGAG CCTCCAAAATCATTGTTTTGGTCTTTCCTTCCCAGCTTCTCCTTTTTGATGGTTTGGATAGAACTGGTTTGGGAAGGAGCCAAAAGGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGGAAGAGAAGGAAGGAGAGGAGAAAGAAGAAAACCCTGAAAGAACTGCAGAGGAAGAAGTTGTCATTGTGATCTCTCCTTCTTATCTTCTCCTCTTTGGTGCTTTGGATAGAACTGGTTTGGGAAGAAGCCGGGAGGAAGGAAGGAAGGAAGGAAAAGAAACCCCTGAAAGAACTGCAGAGGAAAGAAGAGGAGGAAAGGAAGGAGGAAGAAAGCTCTTAAGGATCTGCAGAGGAAGAAGGCTCCTCCAGTCTTCTTTGTGGGTGCCTCCTTCCCAGCTTCTCCTTCCTCTTTTCCACTTTGGATAGAACTGTTTTGGGAGGAAAGAAGAGGAGAGAAAAGAAGAAAGGAAGGAAGGAAGGAGGGAAGGAAGGAAGGGGAGGAAGAAGAGGAAAACCCTGGAAGAACTGCAGAGGGAGAAGAAGTTGTCCTTGTGGTGCCTCCTTCCCAGCTTCTCCTTCCTCTTTGGTGCCTTGGATAGAACTGGTTTGGGAGGAAGAAGGGAGGAAAGAAGAGGAGAGAAAAGGAGGAAAGAGGAGGAAGAAGAAAACCCTGGAAGAACTGCAGAGGGAGAAGAAGTTGTCCTTGTGGTCTGTCCTTCCCAGCTTCTCTTTCCTCTTTTCCACTTTGGGTAGAACTGTTTTGGGGAGGAGCCAGGAGGAGAGAAGAAGAAGAAGAGAGGAGGATCCTGAAGAACTGCAGAGGAAAGAGAAGGAAGAAAACTTTTAAGGATCTGCAGAGGAGGAGGGTCTTCAAGTCTTGGCTTTGTCTCTTCTTTCCTAGCTTTGTCTTCTTTGGCCTTTGGACAGGAC 2 1 5' arm Anolis_carolinensis mirnest 100 100 -62.2 ...((((((((.(((.((((...((((((.(((((.((((...((((((((((((((.((((........((((((.(((.(((((.((......((((.............))))........)).)))))....))).))))))....))))))))))))))))))..)))).....)))))))))))..)))).))))))))))).. (-62.2)