mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATTTGAAATCAGTG CTGGTTTCATATGGTGGTTTAGA CGTCTGGAGCTCCCTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAGTACACAATGTCTAGCACCATTTGAAATCAGTGCTCTTGGAGGAAGAATGGC GTAATACGACTCACTATAGGGCGCTAGCTCGCCGCAGCCGAACGACGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACGGTACCGGACATATGCCCGGGAATTCGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAGAGTGGGCTTAACCACAGCTGCTATAGAGATAGGGATTTTGAATGGCTCCTTTTCTGGACCGCAACTCCAGAATTCATGTTTACTGGGGTTTTTGGAAAGCCTAGAAAAGAAACTTCTCCAGATCCTTCCTTTTTCAGTTTGAGTGGATTGTGTTCTGCTTAGGTTCCTCCTTGAGCTTCAGGAGGAAATGGGAGACGGTTCGGCTTTCTCATTCATGGTTGCCTCTGCGGTCATACGAAAAGGAAACGTCTTTTTCTTTAAAAACCCAAACATGTGCTCACATCTCTCTCTCTTTTTTTCTAGGTCAAGCAGTGGCCTCATTCCTCACCAGAAGGAAGTCCGTCTGGAGCTCCCTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAGTACACAATGTCTAGCACCATTTGAAATCAGTGCTCTTGGAGGAAGAATGGCAGCTCTTTCAGTCTCCCCAGGAAGCCACCGGGGCTTCCAAGGCGAAGGGGGATTTAAGGCATCTGATAAAGTGTGTTTTTTAGCAGCAACCACTTAAGAAATATTTACGGCCTACATTTTAACAAATAGCTTTGACAGCAAAATAGAAGGAAGAGCAAAAAAAAAAAAAAAAAAAGGCCGCCTCGGCCCTCGAGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGGTAAGTGAACATGGTCATAGCTGTTTCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG 2 2 3' arm Anolis_carolinensis mirnest mir-29 2e-21 gga-mir-29b-1 1e-28 -32.4 ..........(((.((((((.((((((((((.((((((..((((((.............)))))))))))).))))))))))..)))))).)))........ (-32.4)