mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAACGCCATTATCACACTAAA GAGTGTGACAATGGTGTTTGT CTTCTTTCCTGCTGGAGCTGTGGAGTGTGACAATGGTGTTTGTATCCAATCCGTCAAACGCCATTATCACACTAAATAGCTACTGCTAGAGAAGC CGGTACCGGACATATGCCCGGGAATTCGGCATTACGGCCGGGAAGCAGTGGTATCAACGCAGAGTGTCCATTACGGCCAGGGGAACAGACTCATGAAAGCCCGTCAAAGTACTGTAGCTAAGAGCATCAGGGACAGAAACCTCATGTTTTGTACTTGAGAGAAAAGCCAAAGGCAACATAAGTATAAAGAGCAAATAACAGCAATACAACAAAACAGGAGCATCCTCCATTTATGTGGGATGCGTGCCTCAAGAACCAGTGATTGGCTCTTCTAAGAGATCCATTCAGACCAATGCAAAATGCCAAGGTGAATCAGTCAATATGCCTGAAATGTTTGCAGATTGGACACACGTTGGCACTGAGGCCCAATATTCAATAAGCGGCACTATCTTCACTTATTCTTCTTCAGCACCCATTGAAGGAATCCACAGTTGTACTTCTATAAATCTAGAGCTGCCAGTGTTGCATCTCCCTTAAGGATCTTCTTTCCTGCTGGAGCTGTGGAGTGTGACAATGGTGTTTGTATCCAATCCGTCAAACGCCATTATCACACTAAATAGCTACTGCTAGAGAAGCCATCGGTTCAGGTTTGGGGCAGGAGGAAGAAGAAGAGAATACAACCGTTTTCAAGACAACTCTTTACTTTTATGGAGTCAAAAGACTATACATTAAATAAAAATATGCTCTGCTTTCCTAAAACTACGAAAAAAAAAAAAAAAGGCCGCCTCGGCCCTCGAGAAGCTTCTAGACCATTCGTTGCGCGCGGGCCCAGTAGGTAAGTGAA 3 0 3' arm Anolis_carolinensis mirnest mir-122 3e-35 gga-mir-122-1 1e-27 -38.9 (((((((...((...((((((..(((((((.(((((((((((.((.......))))))))))))).)))))))..))))))...)).))))))). (-38.9)