mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTGTGTACATGCATATGT ATATGCATATACACACAATAT GTATATATATAGTGTGTGGGGTGTGTGTGTACATGCATATGTACCCCTATATGCATATACACACAATATACACACTTGTGCCTAGAC AATACTGCGTCTACTTTAAAATAGATTTTGCTCTTTGTTCTATTGTATATACTGAAAGTACAAGAAAATAAAAGCAACTCAGTCTAGGGGCAGGAGAAGAGCCTCTCACCAACTGTGAGTATATATATAGTGTGTGGGGTGTGTGTGTACATGCATATGTACCCCTATATGCATATACACACAATATACACACTTGTGCCTAGACAAGTTCATCAGCATTATACATCAATTGCATGACCTCGTGCTGGCCCTGGTTCTAGATATTGGGGAGGGGATGAGTCACCAACGGAGTGAAACAAGGCTGTGTGCTCGCTCCCGTGCTTTTTAGCATGATGTTCTCAGCCACGCTGTCACATGCTTTCAATGAGGATGAACATGGCACCGGGGCCAGTTACTGTACTGATGGCAAATTCTTCAACTTGAAAAGGCTACAAGCAAAGAGCAAAGTGCAGGGAGTGTTGGTGCATGACTTTCTGTTTGCAGATGATTGTGCACTCATTTCAGCCTCTGAAGCTGACAGGAAACAAAGTATGGATCGATTCTCTGCTGTTTATGCTAATTTTGGCCTAACAACACCAAGAAAACACAGGTGCTCCATCAGCCACCAGCACACCATCCACACGTGGAACCATCAGTTACAGCAAATGGAGAAGTTTTGAATGCCATGGATAAGTTTACCTTGATAGTGTATTTTCCGGNNATGTACACATTGATAATGAGGTTGACACATGCATTGCCAGAGCTAGCTCAGTGTTTGAGAAGCTCCAAAGGAAAGTATGGGAGAGGAGGTATTAGACTTACTACCNNACTGAAAGTGTACAGAGCCATTNNGCTGACC 4 0 5' arm Trichosurus_vulpecula mirnest 100 100 -31.1 (((((.....((((((((.....((((((((.(((((((((......))))))))).))))))))...)))))))))))))...... (-31.1)