mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGAGAAAAAGAAGAGTACT AATTCTTTTTTTTTACATAG CAACATGCTCCTTGGAGAAAAAGAAGAGTACTCATTGAATTCTTTTTTTTTACATAGCACTCTAC GCACATGCTTGCCCATGGCTGCTAAGCATAGGTCAAAGACTAGAATTCCTCAAGTAGACTTTCACAGCTCGAGAGATGGTAGCATTCAGGTCACTAAAAGATTTTCTTCAGAAGAAATGGCAGAAACAGATGTGTGTATGCCTTCTTTGCCCATGGTAAGAGCTCCAAATCAAGGGATTGTCTTGCTCCTTATCTCAAGTTGAGGAGTTGCCAAGTTTGGTAGGTCAGGGATAAATCTTTGGATCTTCTTCTTAGAGTAGGGAATTTCCTGATACAGAAATACAACATGCTCCTTGGAGAAAAAGAAGAGTACTCATTGAATTCTTTTTTTTTACATAGCACTCTACATTTATTTTTTTTTGAGATTTTTTATTTTTACTTTACAACACTCAGTTCCACATAATTTTGAGTTCCAGATTTTCTTCCCCCCTTCCTGTTTCCCTCCCCAAGACATTGACCTTATTTACATAATCGTCAAGTTGTAAAGAAGAATTATGACCAATGGAATGAATCATGAGAAAGAAGAAACAAAACCAAAAAAAAAAAAAAAAAAA 5 1 5' arm Trichosurus_vulpecula mirnest 100 100 -13.8 .....((((...((..(((((((((((((.........))))))))))))).)).))))...... (-13.8)