mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCGCCCTGCAAGCCCGGTA CCGGGCTCGAGGGTAGAAGC AAACTTGTTTGTTGTTACTCCGCCGGGCTCGAGGGTAGAAGCTCTGTTTATTTTTGCTTCCGCCCTGCAAGCCCGGTAGCTGGTAACAAATTTGAAG GGACTCTCACGGATTCTTGGGTAGTGTTACAGCTCTTTTAGAATTTGTCTAGTAGGTTTTCCGGTTTTTGCCGGGAAGCCCTTATTTTGTGTTTATGAAAAAAAAGTACTCCAACTAAATGAAAGCGAGAGAAAACTTGTTTGTTGTTACTCCGCCGGGCTCGAGGGTAGAAGCTCTGTTTATTTTTGCTTCCGCCCTGCAAGCCCGGTAGCTGGTAACAAATTTGAAGAAAACAGATCCTGGATGCTAACGCGCAGCTTCCGGGATTAGGAAGCAGCTTCCTTCTCTGAGCGTGACGAGCGCGGCTCTCAGAAGCCCTACATAAGTCGGCTACCTTGCTAAGTATTCCATGGCGTCGGGCCCCGCGCAACCCGCGGCCTTGAGCGCTGAACAGGCTAAGGTGGTCCTTGCTGAGGTCATCCAGGCGTTCGCGGTCCCGGAGAACGCGGTGCGCATGGAAGAGGCTCGGGACAATGCTTGCAACGACATGGGCAAGATGCTGCAGTTCGTGCTTCCTGTGGCCACGCAGATCCAGCAGGAGGTTCTCAAAGCCTACGGCTTCAGCTGCGATGGGGAAGGCGTCCTGAAGTTTGCCAGACTGGTGAAGTCCTATGAGCTCAGATCCTGAGATCGCCAGCTTGTCTGGAAAGTTGAAGCCCTGTTTCTGCCGCCATGACGCTGCCTCCCATGGGCCTGGATANNGGTAGCGTNNAGCTCCTGAGGAGTACCGGCCATCATGACACGCGGGAGGAGATGTGCCATCATCTGGAACTCTTGTACACTTGCTGTCANGGAGGAAANAANNTTGCTGACGCT 4 1 3' arm Trichosurus_vulpecula mirnest 100 mdo-mir-1549 0.00000000000002 -34.6 (((....))).((((((((..((((((((..(((((.(((((.............))))).)))))...))))))))....))))))))........ (-34.6)