mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAATGTTAAGAAGATTGTC TACATCTTTGGAACACATCATG AGAATGGTACATGGAATGTTAAGAAGATTGTCTTCATTGGAGATGAGCGTCAGTATGAAATCGATACATCTTTGGAACACATCATGATTCCCAT GACATAACAGTGCAAATCCCTGCAAAACAAGGTGAGCACACTGAGTGAATTGCAGCTCCTACAGCTAGCTTTCAATGCCCTTTCAATACCTCTTCAATACACTTCATTCAGCGGACCGAATCGGCGTGAAAGCAATGGCAGGGCGTGGGTGCTTCAGTGAAAGACTGCTTGTGCAGCTCATTTTTCTACTGTGTGCATTTGTAAATGTAGCATTGTGCACATTGACAGAGGAAATAAGTGCTAACTCATTGGCTGTCAGATTTGATGAAATATATGACATAGACGATTGGGAGCAGGCAAGGACTGATGGCTTCACCGATTCTGTGACTGAAGCTGTGAACTACCACTGTATGGAGTCAGCTAACTATGCTGATTGTCAGATCTCTGCATATAGTAGCTCCTTTACTGTGGTTTTGTCATCGGCTTCTCCTGAGTATTTCAATGGTGACATCAGGATGACCTTTCACGTGAGGATTCCCGAAGCAGACCGTGCTGATGATGCTACCCTAGAATATGTTGTTCCAGTAGCCACAGTCACAACCATTGTCAAAGACAATGTGGAAGCCATCCAGAATGGTACATGGAATGTTAAGAAGATTGTCTTCATTGGAGATGAGCGTCAGTATGAAATCGATACATCTTTGGAACACATCATGATTCCCATCGTCGTAGTCCTCTTTCTTGTGGTTGTCCTACTAGCTGTCTGTCTAACATGCATGCAGACACGTGGCGAAAAGAAGCTTCAGGAACAGAGAGCGCAGCAAGTAGGATCCAAGGGAGATGAAGGTATCACTCTGACTGCTGTTAAGAGTGGTAGCTATGCCAGTGATGAGGACCGGATCGGACCGGATCGGACCGGATC 4 1 5' arm Paracentrotus_lividus mirnest 100 100 -18.1 ...((((..(((((..((((..(((((((((((((((..((........))...)))))...)))).))))))..))))..)))))....)))) (-18.1)