mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATAGTGCTATTACTTTTGAGC GTCAAAAATGATCATTATAT GGGGGAGTCAAAAATGATCATTATATCTATAGTGCTATTACTTTTGAGCCTAAAAAAT GGGGGAGTCAAAAATGATCATTATATCTATAGTGCTATTACTTTTGAGCCTAAAAAATATCCAAGGAAGTCAAGGGTCTTTCTATCCATCAGAATTATCTAATGAATTTCAAAACCCTACTCCGCGTCCTTTCCTGGAATTTGGTAACGGTGCCAATACGACAATGACATCCCTTACAGATGAAGATGATTCCATTACAACTTTATCATTAAAAGGAGCGCTATTTTTGAATAGAATGCGGGGCCTTCCTCTGAACGTTTTATTTAGAGCAATCCGTGGAGACTTGAAATTATCTCATCAAGAGCCAAGAAATGAGTTAGTCAGATCTGGAGTTCAAGTAGTGAGTACAGAAGGCGACAAATCTCAGAATTGGCATTCCATGTTATCGTCTAAAAAAAAACCTCAAATTGCGAAGCCAGCCTTCTGTGAGACCGAACTAACTACAATAGAGTTGGACATTGAAAAAAAGGATCCCAACTCCTTTTACTATCCAACTTGTGTTCGAGTTGAGCGATGTAATGGATGTTGCTCCCACAACTTACTTTCATGTCAGGCCAAGGAAAGTGGAACAATCGATATCACAATTATGCGTGCGAATCAAAGGACCAATTCAGTGGAATATTTAAAAATCCCAGTCATTCAACATAAAACCTGCTCTTGTGACTGTATTGTGAAGGAAGAAGACTGCTTATCAAATCAAGTGTACAAAAGAAGTGACTGTCGCTGTGCATGTAAAGCTACAGATACAGAGAAGTTAGAATGCATATCCCAGGGGAATCGAATATGGAATCCACATAAATGCTTCTGCCAATG 2 2 3' arm Lepeophtheirus_salmonis mirnest 100 100 -11.5 ..(((..((((((.((((((((((....))))))..)))).)))))).)))....... (-11.5)