mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTAACAGTATGCCGAACTCGT GAGGGCGGTATAATTACAA GAGAATATAGATGTGTGATAAGTAACAGTATGCCGAACTCGTGAACTTGTACACCTGCGTGGAGCAAACAAGGAGAGTAGGAGCCGGGTCGGACCTGCGAGGGCGGTATAATTACAAGAGGAACTACACAGATAT NCCCCGCGGGGGNNCCCCGCGTTATCCGGTTGAAAAAACAAGGTGCCAGNGGNANGGAGNAATCGTGAGCGCNGTGAGGAGNNNGNGTGGCTAAAAAGAGACGTATAATTGAATTAGGATGAAAAGCATAGAAACACATAACTCAGGGCTCAGAAATGCATTTTGATTGACGGAGCACAGAGTCTTGCCGAGAAGTTGCTCCTATGCTTGAAGCCCCCAAGGGAGGGACTTTGCCTGCCCTGGGATGAGAATCTACACCCTCCCGATCAGGTTTTTGGATTTTAGGGATGGAAAAGAAAAGGTACTTGGAGACATCCCAGAGAGGCCTCTGACCGAGATGATTTTTTTTTGTTGGAATAGGGCTCTGGTGTCTCCAAGACTGATCCATGCTTGGCTCTGGGGGCCTTGGAGACTGTGGGCATGGAAGACAATGAATGCAAAGAAGAATAGTGATGATTTATTTTGGAAAGTGGACCTCAGCGGAGAAAAAGGAGCCAAGGCGCGAGCTCGCTAAAAAGACAAACTGCAGGTATACACCAAGCTGTGTGGACGCAAGAAACGGCGGGAAAGAGTAGTCCCAAATACCGAAACCCACAATGAGGCGGTAGCGGGAGTCTATTAAATGAAGAAACGACACAGAAGTGTTGAAAGGTCTAGTACTAAAGCGAATAAAGAGTGAACCAATTGAGGGGGAGAGGAAGGATACGGAACATACAAGGGTTGAAGTGAGAGAATATAGATGTGTGATAAGTAACAGTATGCCGAACTCGTGAACTTGTACACCTGCGTGGAGCAAACAAGGAGAGTAGGAGCCGGGTCGGACCTGCGAGGGCGGTATAATTACAAGAGGAACTACACAGATATAAAGCAATGGAACAGCATAATTCGATTCCAATGTATATAGCGGATACAGGGATCAGATGCCATGACACGTCGTCGGACTTGATGGTGAAGAGGATTTCAGATTTAACGCCCACGCCCTCGGGATCTGTTAACGAGCAATTGAGTTATATAAAGAGTAAATATAGTTTTTGTGCCTGTTGTCTACATATTCTTGTGTGGCGTGATCCATACTAATCTTCATATCTGGGCACTTCGCGATAGCGGTCAGCATATGTCCTGAAGCATAAAGAAGTATACGTTGTGGACCACACGCGTCCACCTACA 3 2 5' arm Homo_sapiens mirnest 100 100 -29.9 ....((((...((((((....((((...(((((((..(((((..((((.......(((.....)))........))))(((..(((...))).))))))))..))))))).)))).........)))))).)))) (-29.9)