mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGGGCAACATAGCGAGACCT GATCGCTGTGAGCCCAGGA CTGAGGCAGGAGGATCGCTGTGAGCCCAGGAGTTTAAAGCTGCAGTGCCCTGTGGTTGCACCTGTGAATAACTGCACTCCAGCCTGGGCAACATAGCGAGACCTCATCTCCAA TGAATGACCTTATCTGTTTCCTGGATAATACCTTTAAGAATAATGTCCTGAGTCAGGCGTGGTGGTGCGTGCATCTAGTCCCAACTATTTGGGAGGCTGAGGCAGGAGGATCGCTGTGAGCCCAGGAGTTTAAAGCTGCAGTGCCCTGTGGTTGCACCTGTGAATAACTGCACTCCAGCCTGGGCAACATAGCGAGACCTCATCTCCAAAAAAGAAAACAAAAAACAAAAAAAGGAATGATGTTCTGGTAGAGATGGCCTTTCACTTGAGGAGTACTCAGTTTTCAGGTTCTTCCTAGCTGTGGGGCTTTTAAATTTGGAAATCTAAACATTCTTTCCCACCATCCTTTTGGACTGTGGACCTGTGGTTTTCTCTTCTAAGTTTCTGTCCCTCTGCTTCCTTACTTTTTTTCCTTTTGGAATTCTATCTTTATCTGTCTTTGGTTCACTTTTTAATGCTATATATGGGCAGGGGTGAGAGACATTACTGAGCACCTTGGTGAGCAAGCCTGGCTTTAAAGATGGGAGAAGAGCTTCTGGCACCAGAAACCTGTT 2 2 3' arm Homo_sapiens mirnest Metazoa_SRP 7.0E-15 ssc-mir-1285 1.0E-9 -42.9 ..((((...((((.((((((((.((((((.........((((.(((((...((..((((....))))...)).))))).))))))))))..))))))))..)))).))))... (-42.9)