mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCGGGGCGCCCGAGGTCTGG AGGCCTTGGGAACCTCGGGAC AGCGCGCGCGCGAGGCCTTGGGAACCTCGGGACCGGCCCCCGGCGAGCGCAGCGGCGCCCAGTGTAAGGGAGTGGGAGCTGGTCCGTGCCGCGGCGGCCGCGCAGGGAGCTCTCGAGGCAACGCCCGGGGCGCCCGAGGTCTGGAAGGCGCAG GAAGCGTTCGAGAGCGCGCGTCGTGGAACGTCTTGGTTGCCACGGCAAGCGCGCGCGCGAGGCCTTGGGAACCTCGGGACCGGCCCCCGGCGAGCGCAGCGGCGCCCAGTGTAAGGGAGTGGGAGCTGGTCCGTGCCGCGGCGGCCGCGCAGGGAGCTCTCGAGGCAACGCCCGGGGCGCCCGAGGTCTGGAAGGCGCAGAAATGGAGCAAGAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATATAAGAAGGCCTTTTTATTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAAGAAGCAAAGAACTACTATAAGCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCATCAAAAGAGTCTGAACACACAGGTCCTGGGTGGGAATCTGCTAGACAGATGCAACAGAAAATGAAAGAAACTCTACAGAATGTACGCACCAGGCTGGAAATTCTAGAGAAGGGTCTTGCCACTTCTCTGCAGAATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATTTCCACCTAAAGACATGTGTGAAAAATTACCAGAGCCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAAGTAAATGGAAACACCTCAACTTCCAAGTG 4 0 3' arm Homo_sapiens mirnest 100 100 -72.8 ...((((.....((((((((((..(((((((....((((((.(((.((((....))))....)))..)))..(((((((...(((.(((.((((...))))))).)))))))))).)))....)))))))..)))))))))).....)))).. (-72.8)