mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTACTGTTTATGTCAGCCCTA GGGCTTTACATGAACAATAACG CAAACTATTTCAGGGCTTTACATGAACAATAACGCTTACTGTTTATGTCAGCCCTATATGACAAA GCTTACTTGTGTTTTCTAATGATGGTGAGGAGAGAAAGGGTAACTATTTAAGATTGTATTTTAAAAAACAAAAACAGTGAAAAGAAACTTGAACACAATGTGATCCAATTAGATGAACAAATGGCTTATGAATCTTGGTAGCTTCAATTTAAAATATAAAATGAATTAAAAACCCCATACATTTATCATTCTTTAATCCCTAAAATAGAAGCAATACGTTACTATCTTTCCTTTGAGAAATGCTGGGAGAAATGACCAACAGAAATAAGCATAAGACAGGGCTTAAAATAGGCAAAAATATCCCAGGAGAAAACTTTCTGCTCCACACAGAAGCTCTGCTGAGGACCACCTGGGGTAGAAGGTAGTTCTCCATATTTTTAACACAACAAAATAATTGCGAAAATACCCTAGAGCTTTCGATAAAGGCAAACTATTTCAGGGCTTTACATGAACAATAACGCTTACTGTTTATGTCAGCCCTATATGACAAATTTCCTAATTTA 3 1 3' arm Homo_sapiens mirnest 100 100 -18.8 ...........((((((..(((((((((.(((...))).))))))))).)))))).......... (-18.8)