mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGAGGGAGGAGATGGGCCAA CGCCCTTCCCCCCCTTCTTC TTGGCATGGGGAGGAGGGAGGAGATGGGCCAAGTTCCCTCTGGCTGGAACGCCCTTCCCCCCCTTCTTCACCTGGCG GGAGTGGCTGTGAGGGGTGTGAAAGTCCCTGGTGCCTTAGCAGCTGGGCAGCCCTGGGATTCAGGAGGAGGGATGTGCTAGGGTCACACAGGGTCAGCAGCAGGGCTGGCCCCTGGGGACTGCCGCCTGTGCGCCTGCTATTACCTGTCTCCTTCTCTGGCGGGGTCGTCTGGAGCCAGTGCGTGACACATGCTGACTCTGTGTATTGTGGTTGCTGCTGTTTGTTTCTTTTATCTTTTAAAAACCTTCCCCGGCTTGTGGGAACACCGTCTGGAGCCCAGCAGCTGCCAGGACTTTGGTGGATGTCGGAGCCGTGACGAGGAGGCTGACGGGGCTCCCGAAGTCTCAGTCCCAGCTCATCCTGCTCCTCAGATTATTGTTGGCATGGGGAGGAGGGAGGAGATGGGCCAAGTTCCCTCTGGCTGGAACGCCCTTCCCCCCCTTCTTCACCTGGCGAACTCCTACTCGTCCTTCAAGACCCAGCTCCAGCGGCATCTCCTCCAGGAAGCCTTCCCTGATTTCCCAG 5 1 5' arm Homo_sapiens mirnest mir-1249 5e-18 hsa-mir-1249 4e-21 -33.7 ...((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..)). (-33.7)