mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCGCTCCCCGGCGCCGCT ACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCGTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG ACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCGTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCCTCGTGCCGAATTCGGCACGAGCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCA 2 2 3' arm Homo_sapiens mirnest SSU_rRNA_eukarya 4e-60 mmu-mir-5105 1e-31 -63.8 ..((((((((((...((((((((.((.((.((((((((((...((((((...((.(((...))))).))))))..)).))))........))))))))))))))))..)))))))))).......... (-63.8)