mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCGCTCCCCGGCGCCGCT ATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCTTTGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG TACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGCGGGGCGCGGGACATGTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCTTTGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGCGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCAACGAGACCGATAGTCAACACAGTACCGTAAGGCACAAGTTGAACAAGAACTTTGAAGAGAGAGTTCAACGAGGGGCGTTGACAACCGCACAAGAGCGTACCACGGGGCTGGACAGTCCCGCGCAAGACGCGCACCGCGACGCATACAAAACACGGGAAGAGACAGAGCAGACCGGACCGAAGATCACGCGAGACCGGCAGCGAATACTACACCACGCACAAACCCAGCAACACACAGAGAACGAGGAGGAAGCGCGAAGGCGCCCCGCGCAAACAAAAAGAAGGAAGACAAACCTCGAGCAGACAGACAGACACCAAGCAAAAAAAGAGCGGAGAACACCGAACAAAGGCAAAGACGAAAGAACGACGGACACGGCAGGCAACAAGAGCGAAGACACAGACAAACGAGGACGCAAGACGAACGAGACAGAAAGCAGCAAAGAGGAAAACGAGAACAAGACACAGAGGGAGCAACAGACCAAACCAGAAAGGACAAAAAC 2 2 3' arm Homo_sapiens mirnest SSU_rRNA_eukarya 6e-59 mmu-mir-5105 5e-25 -65.2 ...((((....((((((((((...((((((((.(((....(((((((((.((.(((((((.(((.(((...)))..))).)))...)))).))..)).))))))))))))))))))..))))))))))....)))).. (-65.2)