mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCGCCGGGCCCGGGTTTTCC AAGACCCGTTCCCCGGCGCCGT TGTGGCGTACGGAAGACCCGTTCCCCGGCGCCGTTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGGGCGCCGGGCCCGGGTTTTCCCGGAGTCGG TCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGCGGGGCGCGGGACATGTGGCGTACGGAAGACCCGTTCCCCGGCGCCGTTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGGGCGCCGGGCCCGGGTTTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACC 2 1 3' arm Homo_sapiens mirnest SSU_rRNA_eukarya 4e-57 mmu-mir-5105 6e-31 -62 ..((((....((((((((((...(((((((((.(((((((((((((...(((.....)))...)))))..))))))))(((.....(((((....))))).))).)))))))))..))))))))))....)))). (-62)