mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGTTGCCCTG GGGCACCTCTTCACTGGCATG CAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGGTCACATACATAACATGCCAAAGGAGAGTTGCCCTGTTGCT ATGTCACTTTATCAACAATGACATGACTAAAGATCTCATAATTTTTGCAGCCTCAGTTTTTTTCTCCCTCTCCACTTCTGTTCTTTTAAACTTTTATTATCATTATTATTAGGAGGTTCCAAAATGGGGGTTGAATGGACCAATAATAAAGTTATCTGACCCTTGGGTGAAAGGAATCATCATTTATATATTATGAGCATCAAATTCAAATCTGATCTGATGAAAGGAAATAGCATTTGTGAGTGGATATCCATAGCATAAGCCTCAGTCCTATTCAAGCATATGCCAAACCTCTTTTTACTAGTTTGGTTTATTCCATCCTTCAGAGTTATGAGTTCTAAGCAAAGCTTGCAGTATAAAAAGATAGAGTGCGCAAAGCTCAAGGAGGCAACTGCTTCACCATCAGTAAGCAAATCAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGGTCACATACATAACATGCCAAAGGAGAGTTGCCCTGTTGCTGC 3 0 3' arm Arachis_duranensis mirnest mir-399 0.000002 pvu-MIR399a 0.00000008 -39.2 .((((((((((((.((((((..((((((((((..(((.((.(((((.........))))))).))).))..........))))))))..)))))).)))))))))))) (-39.2)