mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGTTGCCCTG GGGCACCTCTTCACTGGCATG CAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGGTCACATACATAACATGCCAAAGGAGAGTTGCCCTGTTGCT ATGTCACTTTATCAACAATGACATGACTAAAGATCTCATAATTTTTGCAGCCTCAGTTTTTTTCTCCCTCTCCACTTCTGTTCTTTTAAACTTTTATTATCATTATTATTAGGAGGTTCCAAAATGGGGGTTGAATGGACCAATAATAAAGTTATCTGACCCTTGGGTGAAAGGAATCATCATTTATATATTATGAGCATCAAATTCAAATCTGATCTGATGAAAGGAAATAGCATTTGTGAGTGGATATCCATAGCATAAGCCTCAGTCCTATTCAAGCATATGCCAAACCTCTTTTTACTAGTTTGGTTTATTCCATCCTTCAGAGTTATGAGTTCTAAGCAAAGCTTGCAGTATAAAAAGATAGAGTGCGCAAAGCTCAAGGAGGCAACTGCTTCACCATCAGTAAGCAAATCAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGGTCACATACATAACATGCCAAAGGAGAGTTGCCCTGTTGCTGC 3 0 3' arm Arachis_duranensis mirnest mir-399 2.0E-6 pvu-MIR399a 8.0E-8 -39.2 .((((((((((((.((((((..((((((((((..(((.((.(((((.........))))))).))).))..........))))))))..)))))).)))))))))))) (-39.2)