mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGGGGGGGGATGGGGC CCCTCTCCTCCCCCAAAATC AAAATACCCNGGGGGGGAAAGTCCCTCTCCTCCCCCAAAATCTTTTTTTTTGTGGGGGGAGAAAAGATATATATTTTTTTTTTTTTGGGGGGGGGGATGGGGCGGCCCCCCCCCCCTCTTTC GGTTTCAAGATGGCGGTAGCTGAGGGGTTGACCGAGAGACCCAGTTGAAGGCCTTTACGAAGTGAAAGAGGCCGGGAGTCGCCCCCTACCCGCTTCTCGTAGTCCTGGGAGCACAGCAGAAGTGTTTTTCTTTTTTTAATGAACAAGTAAACCATACAAATTGTCNACATGGGGACGAGATCTACATCATCCCACCAGAGTGGAAAATTTATGAACCCACAGAACCAGCCCCGAAAGGAGCCCCGAAAAAAGAATTTAAGAAAAACAAAAACCCGCCATGAGGGCTCAACTGCAGTTTTAAGATGAAGGAGCCAAACCAAAATCCCCAAATGGGAAATTTGGGGGAAATGGGGTTTACCCCCGGGGCCCCCCCCCCTTTATTTTGGAAAATTTTTTAAAAAAACCCGGTAAAAAAGTGGGGGGAAAACTTTTTAAAAGTTTTTTCCCCCCCTTTTTGAAAAAAAAAAAAACCCCCCATTTTTTTCCCCAAAATTTTTGAGAAACTCTTCCCNNGAATAATTTTTTTCCCCCAAAAGGAGGGGGGGCCCTTTTTTTTCCAAAAATTTTTTTTTGGGGGGGGGCAAAAAAAAAAAACCCCCCCCCCCCCCTNGAGGGGNGGGGGGGAAAAAGAGGTTTTTTTTTTTTTTTCCCTCCCCAAAAAAATACCCNGGGGGGGAAAGTCCCTCTCCTCCCCCAAAATCTTTTTTTTTGTGGGGGGAGAAAAGATATATATTTTTTTTTTTTTGGGGGGGGGGATGGGGCGGCCCCCCCCCCCTCTTTCCTTATTTTTATAAAAAAAAAAAAAAACCCCCCCCTGGGGGGGGGGCGGGCCCCCCCCCCCCGCCCGGGGGGGGGGGGGGGACCCACCCCCCCCCCCCCCCCTCCATATTGAGAGGGGGGGGGGGGGGGNGNNNNCCCCCCCCCCCCCCGGCCACAAAAAAAAAAAAAAAGGGGGGGCGCCCCCCCCCCCGGGGGGGGTCCCTTC 0 1 3' arm Homo_sapiens mirnest 100 100 -54.1 ..........(((((((...(((((((((((((((((((((((((((((((.....)))))))))))...............))))))))))))))).)))))..))))))).......... (-54.1)