mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAGACAAGTCATTTTGTTTT TATAAAATGAATGATTTTAC AAAGATTATAAAATGAATGATTTTACACTATCAAATAAAAAGACAAGTCATTTTGTTTTCAT ACAGTTCTCTGTTTTATTGCATTACAGCAAAGTCTGGTTAATATTAAGTGATATCAACATAAAGTATTGGTGAGGAGTCTTTTGTGACATTTTTTACCATCCCACCTTAAATATTTCTGTGCAAAAGAATCCACATCATTGTTTGGTAGCAGAGGATCTCTTATAAAGTTCCCTAAGACACTGAGGGCATAAAACCAAACAAAATAAAATAAGGAGTGATAGGCTAAAGCAGTATCTTCCCCTCCATCCACATTTGTCAGCATTATATTCTAACCAAAAAATGATCACACCAGGCCATGCAAAACTGTACAATATTACAACGAGAAAAACCCTAAAAAGATTATAAAATGAATGATTTTACACTATCAAATAAAAAGACAAGTCATTTTGTTTTCATGA 4 1 3' arm Homo_sapiens mirnest 100 100 -9.2 ...((..(((((((((.((.((((..............)))).))..)))))))))..)).. (-9.2)