mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAACGAGCAAAGAAAGTGGTT CTGCTCTTTTTCTGTTCGTCCAG AAACTTGAGTGGATGAGGAGTTGCTTCTTATGAACGAGCAAAGAAAGTGGTTACGTGAGAGGGAATCTACTCCTAATGAAGATCCTGTTATAACCGTCTCATAAAATGCTGCTCTTTTTCTGTTCGTCCAGATTTTAAGCATTCTACTCCATTGCCCAG GTCCGGAATTCCCGGGATGGTACAACTCCGTTTTCTCAAGGCCTAGGGGACCTCAGCAGTTGCCTCTCTTCTTTCCTCTGTGTTCGTCATTTTATCAAATTACTGGAAGCTGGGAGTTGAGGCCAAAAGAGGAGAAAATATATAATAGAGCCTGAAGATGTAGTTGTATTGCTTCAGTCTCATGATAAAACTTGAGTGGATGAGGAGTTGCTTCTTATGAACGAGCAAAGAAAGTGGTTACGTGAGAGGGAATCTACTCCTAATGAAGATCCTGTTATAACCGTCTCATAAAATGCTGCTCTTTTTCTGTTCGTCCAGATTTTAAGCATTCTACTCCATTGCCCAGGCTGGAGTGCAGTGGCGCAATCACGACTCACTGCAGCCTCAACTTCCCGGGCCAGTGCCAAGCCCTCCATGAGATCCTGGAGCTAAGAAGATGACAGGAGCACAGTTACTGGATTTATTCAGATACTCAACTACAGTTCTCACGCTCTTTCTATATTTTCTACTTGCAGAGGGGTTTTTTCCGCCTCTGATTACTCTATCCCACCTGGTTATGCAATCACTTCCACCCACTAACTGTCCAAATTCACAGGAGAATTTTCAGACATCACCCCACATACCTTTCCTGGTCTCCTAAATATATAGAAAGTGCATTCTGCAACACGATATCACATAGATCAGTTGCCTATTGCCACGATAAGGCTACAGGACAATCACAAAACTACAATAGATTATAGCAACCCACATTCAGCTTATGAGTCCATGAGGTTAAACTGATCTGGCTACAACAGCAAGGCTAGGCTTCAATTGGGTAAACAGATTTGCTGGTTTCCGCTCGGCTTGTTCACAAGTCTGGGGGACCAGTTTGGCTGGCCCTGGGCTGATCTTAGACCGCCCAGCTCCATTATCCACGAGGTTTACCCAAGCAATGCCCCTCCTCGGAAAGGTGCACCAAAAGCCAAGATGGACCCCAACCCAAGGAGTGAAGGGGCCTTTTTAAAGGTTCAACTCCTAATCATGGCAAGCTCCAAATCCGGGGTGAACCACAGCAAGTTGCCCTGGGCAACCCCCAGGGGTTAAATAGGAAGGGTAACAAAATGTGCCTTGGCCCCCGTATCTCACCTGCCCACACGCA 3 2 5' arm Homo_sapiens mirnest mir-1255 0.000002 ppy-mir-1255b-1 0.0001 -35.2 .......((((((..((((..(((((....((.(((((((((((.((((((...((((((((((.(((...........)))))))..........)))))).....)))))).))))..))))))).))......)))))))))..))))))...... (-35.2)