mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTCCAGAGGGGAGATAGG TTCTTCTCTATAGAATAA CATTGGTCCAGAGGGGAGATAGGTTCCTGTGATTTTTCCTTCTTCTCTATAGAATAAA CATTGGTCCAGAGGGGAGATAGGTTCCTGTGATTTTTCCTTCTTCTCTATAGAATAAATGAAATCTTGTTACTAGAACAAGAAATGTCAGATGGCCAAAAACAAGATGACCAGATTTGATCTCAGCCTGATGACCCTACAGGTCGTGCTATGATATGGAGTCCTCATGGGTAAAGCAGGAAGAGAGTGGGAAAGAGAACCACCCCACTCTGTCTTCATATTTGCATTTCATGTTTAACCTCCGGCTGGAAATAGAAAGCATTCCCTTAGAGATGAGGATAAAAGAAAGTTTCAGATTCAACAGGGGGAAGAAAATGGAGATTTAATCCTAAAACTGTGACTTGGGGAGGTCAGTCATTTACAGTTAGTCCTGTGTCTTTCGACTTCTGTGATTATTAACCCCACTCACTACCCTGTTTCAGATGCATTTGGAATACCAAAGATTAAAGCCTTGACATAAGATCTCATTTGCAGAAAGCAGATTAAAGACCATCAGAAGGAAATTATTTAGGTTGTAATGCACAGGCAACTGTGAGAAACTGTTGTGCCAAAAATAGAATTCCTTCTAGTTTTTCTTGTTCTCATTTGAAAGGAGAAAATTCCACTTTGTTTAGCATTTCAAGCTTTTATGTATCCATCCCATCTAAAAACTCTTCAAACTCCACTTGTTCAGTCTGAAATGCAGCTCCCTGTCCAAGTGCCTTGGAGAACTCACAGCAGCACGCCTTAATCANAGGTTTTACCAGCCCCTTGGACACTATGGNGAGGAGGGCAAGGAGTACACCAAATTTGGTTAAAAGCAANGAAACCACAGTGGTCTCTTCCACTAGTCATTTTAGAACATGGGGTATCANTCCAAGACTACTTCTACCCTGGCAACATTGGAACTCCCCAAGAAGCAAATCCACCACTTTCCTCCTTGA 4 1 5' arm Homo_sapiens mirnest mir-198 3e-21 ggo-mir-198 3e-27 -11.2 ..(((.((...((((((((.(((.((....)).....)))))))))))...)).))). (-11.2)