mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTGGAACATAGTAGGCAC GTGTAAGTGTGTGTGTGTGTG GCTTAGCACCATGCCTGGAACATAGTAGGCACTCAGTAAATCTTAGCTCATTACATTAGCAGTTGACTGAAGATGGAAGGGCTGTTTTGGGAGGAAGTGAGCTCTTCACCACCGGAGTCATTCAGGGAAAGACTAAATGATCAGAGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTG AAACGACCCGAAGACAGGCATGTTAGATAGCCCCCACATTGGAAACTTCGTCACTTGGAAAGAAAGATTAGATTTCCTATCTGTGGTCCCAAGACATGGGACTGGGGCTTACAGAGGAATGGTATAGAAGGACTGATCCCACGTAGTGATGGGGAAACAAAGCCTTAGGGAATGCCTCCCTCAAAAGATGGCTGTAAGGATTAATGTTATAATCTCTGTAAGGGGCTTAGCACCATGCCTGGAACATAGTAGGCACTCAGTAAATCTTAGCTCATTACATTAGCAGTTGACTGAAGATGGAAGGGCTGTTTTGGGAGGAAGTGAGCTCTTCACCACCGGAGTCATTCAGGGAAAGACTAAATGATCAGAGTGTGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTCGGGTCGTGT 4 2 5' arm Homo_sapiens mirnest 100 hsa-mir-3116-1 0.0001 -39.7 ((...(((((((((.((..((((..((.((((((..((((...((((((....((((..(((....)))..))))...)))))).))))...((..((((.....))))..)).((.(((((.((.......)).))))))).)))))).)).)))).)).))))).))))..)). (-39.7)