mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTAT AAAGCTAGATAACCGAAAGTA GTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATC GATGTTTTAGCCGCGCACACACACAAACAGAAACCAGGTCATATTTACATAAAAGGAGGAATCTTAAGCGCGGCAAGTATCCTGGACGACCACTCTTCGGTACTGCCAGAAAGGATCAGGACCTGGAGTCTGGCAAGAGGAAGACAGAGGCCTGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCGGGGAGCGTGTGAGAATGAAAGACTACAGCCGAGAGACAGTAAAAACCAGAAAGGTCAGGAATACTTATTGAATCTAACTTTGTTTTTGTTTTGTTTTTTTCCTTATGATTAAAGGTGGGATGAGAGAAAAAAAAAAAGGAC 2 0 5' arm Homo_sapiens mirnest mir-9 2e-17 rno-mir-3597-2 8e-48 -38.3 ......((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...... (-38.3)