mature_miRNA	miRNA*	pre-miRNA	EST_contig	mismatches	bulges	arm	species	source_database	RFAM_best_hit	RFAM_lowest_evalue	miRBase_best_hit	miRBase_lowest_evalue	folding_energy	secondary_structure
TCATCCTCGTCATCATCTTTT AAGATATGGGCAAGGATAAATG GAGGAAAACCTGAAAAAAGGGAAAAGATATGGGCAAGGATAAATGAGTCAATGCCAACTTGTTATAAAGCAAAGAAAGCTATCTTGAATTTGGTTATCCTCCCCGTAACAACAGCATCTAGGAGACAACTTTACACTAAGTTCTTACTTAAAGCAAGGGAAGCAACAAGTATGATTAAAAGGCCAGCAGCGAATTTAGTTATCATTATCGTCATCTTCATCATCATCATCATCATCATCATCCTCGTCATCATCTTTTCCCTCTTCATCACCATCAAA GCATTAAACGGCAATTCCATTTTACCAATATATCATAAATTAATCATTGATAAATTCACACGTCAGCTCAATAGCAACAAATATAATCTATTCTGCATTTTACACACTAATTAAACAAAACTATAAATGAAGGGCAGAACTCCAGTATTATGCAGAAAATTTCTTGACACCCGCAGAGAGGAAAACCTGAAAAAAGGGAAAAGATATGGGCAAGGATAAATGAGTCAATGCCAACTTGTTATAAAGCAAAGAAAGCTATCTTGAATTTGGTTATCCTCCCCGTAACAACAGCATCTAGGAGACAACTTTACACTAAGTTCTTACTTAAAGCAAGGGAAGCAACAAGTATGATTAAAAGGCCAGCAGCGAATTTAGTTATCATTATCGTCATCTTCATCATCATCATCATCATCATCATCCTCGTCATCATCTTTTCCCTCTTCATCACCATCAAAATCCTCTTCATCAGCCTCATTGTTGAAATAAGTGAGTGGGTTGGGCCACAAATCCTCCTTGATAATCTCTGCTACTTCATCATGAATTTCATCCATGTCATCTTTCTGATGAGCATCAGTAAACCAGGTAAAGAAACTTTCTTCAGCAAGTTGCCGCTTGTATCCTTTCTTCTCATGAATAACTCCATTTGGTAAGCCCATGCCTTCTTTCCACTTGATTTGG 5 1 3' arm Gossypium_raimondii mirnest  100  100 -42.6 .(((....)))(((...(((((((((((...(((.(((((..((((....(((...(((((((.....((...((.(((((.........))))).)).((((.((....)).((...((((.((.(((((......))))).)).))))..))..)))).)))))))))(((((...((((......((((...............))))..))))....)))))))).....)))).))))).)))...))))))))))).)))............ (-42.6)