mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATCTGGAATCCTGTGTGAGGG CTCATAGCAGTGTTCTGGAATCC AATATTCAGACCCTCATAGCAGTGTTCTGGAATCCTTTGTGAGGGACAAACATTCAGACCCCAGCAGGAGGGATCTGGAATCCTGTGTGAGGGACCAACATT TAGCAGTGTTCTGGAATCCTACGTGAGACACAGACATTCGTACCACAGCAGAAGTGTTCCGGAATCTTATGTGAGGGACAACCATTCAGACCACAGCAGGAGTGTTCTGGAATCCTATGTGAGGGACAAATATTCAGACCCTCATAGCAGTGTTCTGGAATCCTTTGTGAGGGACAAACATTCAGACCCCAGCAGGAGGGATCTGGAATCCTGTGTGAGGGACCAACATTCAGACCCTCGTAGCAGTGTTCTGGAATGCTATGTGAAAGACAACCATTCAGACTCTCATAGCAATGTTCTGGAATCCTATGTCAGGGACATTCAGACCCCAGCCGCAGTGTTCTGGAATCCTATGTGACAGACAAACATTCAGACCACAGCAGGAGCGTTCTGGAATCCTATGTGACGGACAAACGTTCAGACCATAGCAGTAGTGTTCTGCAATCCAATGTGAGGGACAAACATTCAGAGCCCAGCAGCAGTGTTCAGGAATCCTATGTGAGGGACCAACAATCAGACCCT 1 2 3' arm Homo_sapiens mirnest 100 ppy-mir-1299 1e-22 -33.3 ..........((((((((.(((.((((((((.((((((.((.(((..............)))..)).)))))))))))))).)))))))))))......... (-33.3)