mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCTTGGAAGGTTCATTATAT TTGAGAAGCCTTCCGAGAATA TGAAACTCGCTCCTGGAGGACACCTTGGAAGGTTCATTATATGGACCAAATCGGCTTACGAGAAGCTGGATTCGATTTATGGGTCATTTGAGAAGCCTTCCGAGAATAAGAAACGGTACATCTTGC CAAGCCAAAACCCTAAACAATGGCAGCAGCTGCCGCCGCCGCTGCACGTCCTCTGGTCTCCGTCCAAACCATAGATTCTGACATGGCCACTGACTCCACCCAAACCGTCCCACTCGCCGATGTCATGAAAGCCTCGATCCGACCCGACATTGTCACCTTCGTCCACGACAACATCTCCAAAAACCGCCGCCAACCCTATGCAGTCTCCAAACGCGCCGGTCACCAGACCTCTGCCGAATCCTGGGGCACAGGCCGCGCTGTCTCTCGCATCCCCCGTGTTCCCGGCGGAGGTACTCACCGTGCTGGTCAAGGTGCTTTCGGAAACATGTGTCGTGGAGGCCGCATGTTTGCTCCGACCAAGATTTGGCGCCGCTGGCACCGGAAAATCAACGTTAACCAGAAGCGCTATGCCGTTGCTTCGGCGATCGCTGCCTCTGCCGTAACCTCCCTCGTCATGGCACGTGGCCACCGCATCGAGGCCGTACCGGAGATGCCTCTGGTCATATCTAACGCCGTGGAGAGCGTTGAGAAAACCTCTGCCGCAATTAAGGTTTTGAAACAGGTTGGGGCATATCCCGACGTGGAAAAGGCTAAGGACAGCGTTGGAATCCGACCCGGGAAAGGGAAAATGAGAAACCGGAGGTACATTTCCCGTAAAGGTCCATTGATTGTTTATGGAACAGAGGGGGCAAAGCTCGTTAAGGCCTTTCGTAACATTCCTGGAGTCGAGGTTGCCAATGTAGAGAGACTTAATCTATTGAAACTCGCTCCTGGAGGACACCTTGGAAGGTTCATTATATGGACCAAATCGGCTTACGAGAAGCTGGATTCGATTTATGGGTCATTTGAGAAGCCTTCCGAGAATAAGAAACGGTACATCTTGCCTCGTTCTAAGATGGTGAATGCGGATCTCGGTAGGATAATTAACTCCGATGAGGTGCAGTCCGTGGTGAAGCCAATTACAAAGGAGATCAAGAGGGCACCATTGAAGAAGAATCCTCTTAAGAACTTGAATGCTATGCTGAAGTTGAACCCATATGC 5 0 5' arm Gossypium_raimondii mirnest 100 100 -32.2 ..........(((....)))...(((((((((((..(((.((((.((((.(((((((.....))))))).)........))).)))).)))..)))))))))))..(((((.........))))). (-32.2)