mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGCCCGGGCTGCTGCTGCTG GGCAAATGGTTCAGCCCCA AGGGGTCCGGGGCCCGGGCTGCTGCTGCTGGCCGTCCTGTGCCTGGGGACAGCGGTGCCCTCCACGGGAGCCTCGAAGAGCAAGAGGCAGGCTCGGCAAATGGTTCAGCCCCAGTCCCC CCGCGCCGGCTGTGCTGCACAGGGGGAGGAGAGGGAACCCAGGCGCGAGCGGGAAGAGGGGACCTGCAGCCACAACTTCTCTGGTCCTCTGCATCCCTTCTGTCCCTCCACCCGTCCCCTTCCCCACCCTCTGGCCCCCACCTTCTTGGAGGCGACAACCCCCGGGAGGCATTAGAAGGGATTTTTCCCGCAGGTTGCGAAGGGAAGCAAACTTGGTGGCAACTTGCCTCCCGGTGCGGGCGTCTCTCCCCCACCGTCTCAACATGCTTAGGGGTCCGGGGCCCGGGCTGCTGCTGCTGGCCGTCCTGTGCCTGGGGACAGCGGTGCCCTCCACGGGAGCCTCGAAGAGCAAGAGGCAGGCTCGGCAAATGGTTCAGCCCCAGTCCCCGGTGGCTGTCAGTCAAAGCAAGCCCGGTTGTTATGACAATGGAAAACACTATCAGATAAATCAACAGTGGGAGCGGACCTACCTAGGCAATGCGTTGGTTTGTACTTGTTATGGAGGAAGCCGAGGTTTTAACTGCGAGAAGTAACCTGAAGCTGAAGAGACTTGCTTTGACAAGTACACTGCGAACACTTACCGAGTGGGTGACACTTATGAGCGTCCTAAAGACTCCATGAT 4 2 5' arm Homo_sapiens mirnest 100 100 -53.2 .((((...(((((..((((((.(((((..((((.(((((((...(((.((....)).)))..)))))))(((((.........))))).)))))))))..)))))).)))))...)))) (-53.2)