mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGACTGAAGGGAGCTCC GGTTCCTTTGCAGCCCAAAA TGTCAAGAAAACTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCTCTTTTCCTTCT CTCTCACTATCTTTCTCCTTTTTTCCATGAGCTTAATTGTCAAGAAAACTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCTCTTTTCCTTCTCTAATGGCTTTCAAGGCTGGAAACTATTAACCAATATACGTATATATATATATAT 1 1 3' arm Vitis_vinifera mirnest 100 vvi-MIR319e 5e-56 -38 ......(((((....((((.(((((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))))).))))....)))))..... (-38)