mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTAGATGACCAGCAACAAAAC TTGTTGATGATCATCTAATC AGCCGTGATGTGATGCATTATCCTGAATGTGTTTGTTGATGATCATCTAATCATCCTGCCATGAGCGTTAAACATGACTAACAATGACTAGATGACCAGCAACAAAACATATTCATAGCTGCAAAACACATACTAGA TTTTTTTGCAGTTTAATTTAGATCAACTCAATTACTATATCTGTTACCCTCCATTAGGGGGAAGAATCGAAGTACAATTCAGAGGCGAGGTGTCCAACTGCTTTAACCCTCATCCTTTAACTTCTAACAAAATATTTTCAATGGTCCAAATACAAACACATCTTCCATCTTCATAAGAAATCATAACAAACCTCAAAGGTGATAAATGTTGAATCAGCAGATGACAGTTTTAGTGGGCCACACAGAAAAAGTGAGCATCATTTGCAGCGTTTGAGAGAAAGACATACCATCTATGCAGACAGGCAAAATCAGAAGACAAAAGAAGGATCATCAAACTAAAAAAAAAAAGGTTCCAATTCAGAGTAAACAATAACTATTTGTGCACGCACACCCATGATGAGAGAGGGGGGGGGGAGACACAGCCGTGATGTGATGCATTATCCTGAATGTGTTTGTTGATGATCATCTAATCATCCTGCCATGAGCGTTAAACATGACTAACAATGACTAGATGACCAGCAACAAAACATATTCATAGCTGCAAAACACATACTAGACCCTC 3 1 3' arm Vitis_vinifera mirnest 100 osa-MIR827b 0.00003 -33.4 .......(((((.(((((((...(((((((((((((((.((.(((((((.((((.....((((.........)))).......)))).))))))).)).)))).)))))))))))))).))))...)))))...... (-33.4)