mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAAAATCATCCCCCATGCTGT TGCTCAGGGTGATGAGTTTGGT CATTGGGTCAACCATTCGAGACAAAATCATCCCCCATGCTGTTTCATGGTTCACAGGGGAGGCTGCTCAGGGTGATGAGTTTGGTGACATGGAAGATGATGAA TTGGGACGGAGATTGAATGGTTCCCAGGAAAATGCTTGACTCAAAAGCTCCTGAAGAAGAAGCCTAGGAAGGGCTCTAAAAATGCCAAGCCAATCACAAAAACAGAAAGTTGTGAAAGTTTTTTCAATTTCTTTAGTCCACCACAAGTTCCTGAGGATGATGAAGATATTGATGAAGACACTGCTGAAGAGCTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACCATTCGAGACAAAATCATCCCCCATGCTGTTTCATGGTTCACAGGGGAGGCTGCTCAGGGTGATGAGTTTGGTGACATGGAAGATGATGAAGATGAAGACATTGATGAAGATGATGATGAAGATGAGGATGAAGAAGAGGATGATGAAGAGGACGGCGATGAAGATGAAGAGGATAGCAAAGCCNAGAAGAAGAAGAGTGGCAGAGTACAAGTTGGAGATGGCCAACAGGCTGAGCGCCCTCCGGAATGTAAGCAGCAGTAGAGCGTTTGATAAGCGAAGGAAGAGTTGAGAT 5 1 5' arm Vitis_vinifera mirnest 100 100 -29.7 ((((..(((..(((((((...((((.(((((.(((..((.(((((.((.....))...))))).))...))).))))).)))).))).))))..))))))).. (-29.7)