mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACAGAAGAGAGGGAGCAAA TCCTTTCCCTTTTTTTTTTCATC GATATAGGATGATGACAGAAGAGAGGGAGCAAAAACACTTCGAATTTTTTCCTTTCCCTTTTTTTTTTCATCTGATCTGGA TTTTTTCAAAAAACCAAAAAGGACTAACTTATTAATCATTATTAACCATAGAAGTACATGGCACATAATCACACACCAACCCAGAAGGCCTAATCCACATGCAAATAGCCCACAAATCCTAAACACAAATCACTCAAAGGGGGAAGAGAGGCCAAAGATCAAAGGCCAAATTGATATAGGATGATGACAGAAGAGAGGGAGCAAAAACACTTCGAATTTTTTCCTTTCCCTTTTTTTTTTCATCTGATCTGGAAATGCTTATAAGAAGAGGTTCCAGGGAGGTTGACCTCAACTCTGCCTGCAGCTCTTTCCTCGGCTTGCCTGCACTGATTTTCCTTCTCTTTCCCGCCTGACCCTTCTGCATTCTGAGACTCCGATGCACCCTTCCTCCGCCTCTCATTGTGGCCGGCCAACCGCCTCCGGCAACTCCTCTTGGCTTCATCAAACTCAGACAACTCATGGAACCTGTGAAAGAACTGATCATCATACATGGATGAAATATAAAAACCATCTGCAGATTTTCAATTATCATCATGAAATGATGCCAAAAACACAGGATTCATCGGTTTCAAGAGTGTGAAAATCAAACTCCAACATATATAAATTGCAGAGAAAAAAAGGGAAAGTTTTACAACATTGGATTCATTTGTTTGAACAGAAAATCTTCAGGGAAAATTTGGGGTTCAGTGAAAGTAGTTTTTTTGTTGAAGAAAGGTAACTGAGGTAAATTAATATAGGACATGCCCATATTTTCCATCAAAACAAACAGGAACGCAAGTTTATTTGCATACAACATAGAATTGAATAGGGGACTGCATTCAATTCAATGCTGAAAAAAATGTATGGAAAACCCAAAAAAAAAGTCCAT 2 2 5' arm Vitis_vinifera mirnest 100 vvi-MIR156a 0.001 -21.9 ......(((((((((.(((((((((((((.(((((..........)))))...))))))))))))).)))))..))))... (-21.9)