mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACATCATCATCATCATCATCC AGGATGATAATGAGAAAAGT CACCTGCTACTACATCATCATCATCATCATCCTCTAGCTCTAATCTTGGAAAGAACTTTGCATGTTCTTCAATGCTAGATCGATCATCACTTGGAAGCAAAATGAGTTCCGAGTCTACACCAGACATATCAGCAGCCTGTGAAACGTCCTCAAGATCTGTAGCTTGGAGGGAGGGTTATGACGAGGAGGATGATAATGAGAAAAGTGATTCCTT GCGGGGGGGGATAAGGAACGTCGCAATGTTTCAGAAAGGAGTTTTGAGGACAAATTGCATAGATTGCTTGGATCGTACAAATGTTGCACAATATGCATATGGTTTGGCAGCTTTAGGACATCAGCTGCATGCCTTAGGAGCCATTGGTTCCTCCAAGATTGACCTTGACGATCCTTTGGCCCAAGAATTAATGGGATTTTATGAGAGGATGGGCGACACGCTTGCTCACCAATATGGTGGTTCTGCTGCACATAACAAGGTGTTTTCTGAGAGAAGGGGTCAATGGAAAGCTGCAACACAATCACAGGAATTTTTTAGAACTCTTCAACGCTACTACAACAATGCTTACATGGATGCAGAGAAACAAAATGCAATCAATGTATTTTTGGGGCATATTCAGCCAGAGAAGGGTAAACCTGAAGTTTGGGAGCTGGATCCAGACCAGCATTCGAGTGTATATAGGAGGAATGGGCACTCAGGGATGGACGAGGATAGGAGGTCGCTACATAAGAAGTCTTTATCCGATGGCAACATCATTCGTGGTGGCAAGTCACCTGCTACTACATCATCATCATCATCATCCTCTAGCTCTAATCTTGGAAAGAACTTTGCATGTTCTTCAATGCTAGATCGATCATCACTTGGAAGCAAAATGAGTTCCGAGTCTACACCAGACATATCAGCAGCCTGTGAAACGTCCTCAAGATCTGTAGCTTGGAGGGAGGGTTATGACGAGGAGGATGATAATGAGAAAAGTGATTCCTTTGATTACT 5 1 5' arm Helianthus_argophyllus mirnest 100 100 -45.5 .......((((...((.((((.((((((.((((((((((((..(((.((..(((.(((...(((((..(((.((((.(((.((...))..((((((.((...))..))))))((((.....))))..))))))).....))))))))....))).)))....)).)))...)))))))....))))).)))))).))))))..))))....... (-45.5)