mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAAAAGTTGTTGGGTTTGACC TGACCAGACCACTTATGAT GGTAACTCTTGGTGACCAGACCACTTATGATGCAAAAGTTGTTGGGTTTGACCAAGATAAAG TCACTGAGCACAGCAGCAACAATGGCTACCTGTTCACTCATTTCCTCAAACACATTTTCTTCTTCTCAAACTCTCCACCTTCCTTCAACTAACTCCACTCTACTTTCTCTCTCTAGAACCTTCTCTCTCCGTACACCTCACACTCACCGTCGCATCTCTTCCATCACCACCGCTACCTACTCTCCGGCACCGGAATCTCACCGGAACTCCTCCTCCTCCGTCACCAAATTCCTTGACTCCTGCTTCGTATTTTGCACTTCTGTAGCACTCTCTGTTTCTGTATTTGTTACAGATGTAGATACAGCTGCTGCGTTTGTCGTCGCTACGCCTCGGAAGTTGCAGACGGATGAACTCGCTACTGTTAGTCTGTTTCAGGAGAATACTCCGTCTGTTGTGTATATTACTAATCTAGCTTCTAGGCAGGATGCGTTTACTCTGGACGTGTTGGAGGTGCCTCAAGGATCTGGATCAGGCTTTGTTTGGGATGACAAAGGCCATATTGTCACAAATTATCATGTTATCAGAGGGGCATCCGATCTTAGGGTAACTCTTGGTGACCAGACCACTTATGATGCAAAAGTTGTTGGGTTTGACCAAGATAAAGATGTTGCAGTATTAAGTATTGATGCACCAAAAGACAAATTGAGACCCATACCAGTTGGCGTCTCGGCTGACTTGCTTGTTGGCCAAAAAGTGTTTGCTATCGGAAACCCATTTGGGCTCGATCACACACTCACAACTGGCGTTATCAGTGGACTGAGGAGAGAAATAAGCTCTGCGGCAACCGGGCGTCCAATCCAAGATGTCATCCAGACAGACGCTGCAATCAACCCTGGTAATAGTGGTGG 3 2 3' arm Helianthus_ciliaris mirnest 100 100 -18.6 ......(((((((((((.(((.((((.((...)).)))).))).))))..)))))))..... (-18.6)