mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGCTTGGTGCAAATCGGGAC CCCACCTTGCACCAAGGGAAT CCACGTCGGGTTCGCTTGGTGCAAATCGGGACCTGCGGCCCTGCTCGGACCGGACAGATCCCACCTTGCACCAAGGGAATCCGAGCCG GGCGAGGAAGGGAAGATGTCAAGCGCCCCAAGCCTTCGCGCCACGTCGGGTTCGCTTGGTGCAAATCGGGACCTGCGGCCCTGCTCGGACCGGACAGATCCCACCTTGCACCAAGGGAATCCGAGCCGGAGCAGCCGACCGACCGACCGCCGCCGCCTGCGCTGCTCGGCTCTGCTCTAGATTGCGATGCCGAAGCCTGCTTGCTGCGTGTTTTTTTTTAATTTTTCTGATAAGGATCGTGCGGATTGCTGTAATGATTCTGTGTCGCCAAAAAAAAAAAAAAAAAAAA 5 0 5' arm Sorghum_bicolor mirnest MIR168 6e-24 sbi-MIR168 3e-25 -38.9 .....((((((((.((((((((((...((((.((((((.((.....)).)))..))).))))...)))))))))).)))))))).... (-38.9)