mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCTTCCTCTTCCTCTTCAT AGGGAGGAGGAGGAAGAGGGA AGCCCGGTGTTGCTCTGTATTCTTCTTCCTCTTCCTCTTCATTTCCTCCACCGCTCGCTCACCTCTTCTTCTCCTCCCCCCACTCCAGCCATGAATATGATCGTCAGAAGCTGCTAGCATCATCTGCCGCCTCAACTTCGTCACCTCCTCCTCTCCATTCTATCCCCGCGCAGCTGCCCCAGCTGTATATATCCCCGCGCCCAATTTGGTCCCTCCCTGGTGTGGGTGAGGTCAGCTGTTTTAGCGCAGCGCAGCGCGCGGGCGGGCGGCGTGGCAGCAAAGGAAGCAAGGAGAACAGCGGCGGCGGCGTAGCATGCGGCGGTGAGGGAGGGAGGAGGAGGAAGAGGGAGCCGCCAAGAGAGCG CCCTGTTTCTCCTTGTCCTCCTGTGATGAGCCCGGTGTTGCTCTGTATTCTTCTTCCTCTTCCTCTTCATTTCCTCCACCGCTCGCTCACCTCTTCTTCTCCTCCCCCCACTCCAGCCATGAATATGATCGTCAGAAGCTGCTAGCATCATCTGCCGCCTCAACTTCGTCACCTCCTCCTCTCCATTCTATCCCCGCGCAGCTGCCCCAGCTGTATATATCCCCGCGCCCAATTTGGTCCCTCCCTGGTGTGGGTGAGGTCAGCTGTTTTAGCGCAGCGCAGCGCGCGGGCGGGCGGCGTGGCAGCAAAGGAAGCAAGGAGAACAGCGGCGGCGGCGTAGCATGCGGCGGTGAGGGAGGGAGGAGGAGGAAGAGGGAGCCGCCAAGAGAGCG 4 0 5' arm Sorghum_bicolor mirnest 100 100 -121.804 ...........(((((((.(((((((((((((((((((....(((((.((((((.(((......(((((....................................))))).(((((((.....(((((((.....((((......((((...((((((.((.(((((((((.(((((..((((((.((...((((((((((......((......)).)))))))).)).)))))))).......))))).....))))))).))..)).)))).))...)))).....))))....)))))))..)).))))).))))))))).))))))))))))))))))))))))...))....))))). (-121.804)