mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCAGTTGCTGCCTCTAGCTT GCTTGAGACAACAACTGCACA TGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATTATCGGTATGGTTCAAAAACCAATTTTCTTGCAAGATATGCAGTTGCTGCCTCTAGCTTGTCACCACCCCTTGCATTA TGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATTATCGGTATGGTTCAAAAACCAATTTTCTTGCAAGATATGCAGTTGCTGCCTCTAGCTTGTCACCACCCCTTGCATTAATCTGAGACGACGGGCGCGCCGCTGCCGATGAATTGTGACGATGGGGGGCCGGGCTAGATACAATCATACAAGAGAAGGGAAGTGCGAGGAGGAGGCAGTGCCGATCGAGCCGGGACGCGGATGAGCTAGAGGAAATTGACATGCTTCAGGAGGTCACGAAGCAAATCGAAGGGCATACTATCTGTGCCCTTGGGGATGCTGCGGCATGGCCTGTGCAGGGACTTATCAGGCACTTCAGGCCAGAGTTGGAGAGGAGGATCCGCGAGCGAGCTGAAAGGGAGCTGTTGGCGGCTTCTGCATAATGTGCCAGCCATGTTGCCCCTGTACTAGTTTTCTGATTTCTTCCTATCGAAATAATACAAACTGATGGAGCTCCTTTCTGTGTAAGGAAATGCAGCCTTCCTGATTTCTTTAAACCATTTATGTGGATGTTTATTTGATGCACTCAAGCAGCTGTGAATTTTGATGGACTAGATAAACTTTTCAAAGTAGAAACAAACTTGAGGGTTGTCCTGTGTATGCTACATGATCCAT 3 0 3' arm Sorghum_bicolor mirnest MIR444 4e-60 ssp-MIR444c 3e-54 -54.1 ..((((.(((.((..(((((((.(((.((.((((((((...(((((((((((((........(((((....))))))))))))))))))...)))))))).)).))).)))))))..)).))).)))).... (-54.1)