mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAAGGGGCATGCAGAGGAG CTCCTGTGCCTGCCTCTTCCATT AGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATTCCTTCTGC TAGTAGTAGGGATAGGAATCAGGGTCAGTTTCCTCTCCTGGCTGTAGCAGCAGCAGCAGCAGTGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCATTCCTTCTGCTACGCTATGATTGCAACAGTCAGAGCCCAGAAATGCAAGCATCTGCAATTGCCATGTGAGGCAACACCGCAACGGCATTGGCCTCTCCACATTCCACCTCTGCATTGTAAGTTTCTCAGTCATTTCTGAACCTCAATTTGTGTTATATTAGCAGGTGAATCACATGGAGAGCTCCAGGACTTCTGAAGTCTGAAGATAGACCACGGATGCGGTCGACACGGATCTGGCGGGCAACAATGTCCAAGTACCTGCATGTGAACAGATCGTGGGGCTGCATTCCCAAACCCTGCAAACGAAAATTCCTTCACTTTTGTTAAAAATGAAATGCAAGTGTGAAATGGAACCATCGACTAGCAGCTTTGTATATTTCCTCAAGTTACACTTGATGATTGCATCATTTGGCCCCGCTCATCAGTTGCTTCAGAATACAGGGAATCAGTCAGAATGTGCGAAGAATTCACTAGGGCCGGGCAGTATGTATACTCGTAGTTTCACTTGATTAATACCAGCTACCTACAGTC 1 2 5' arm Sorghum_bicolor mirnest 100 sbi-MIR528 2e-42 -53.3 .((((.((.((((((((((((((((((.(((((.((((((((((((...)))))).....))))))...))))).)))))..))))))))))))).)).)))) (-53.3)